rs29506223 SNP Detail

Summary

• ID
  rs29506223
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:118944380 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GGAAC TTCCAAGAAA TAAAAATAAA
  R
  TGAAGTATAA AATACAAAGA TGTAT                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45323711	mCV23833192	ABI	CRAMUS_MOUSE	f	SNP	G	G	A	G
ss147323401	ENSMUSSNP4665602	ENSEMBL	ENSEMBL_Sanger	f	SNP		G		G
ss320473769	CHEV_2_118939635	CHEVERUD	SCREENING_POP	f	SNP					A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs29506223					SNP	G	G	A	G	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:118944380 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi12105	CpG island 12105			602 bp distal
Gm57476	predicted gene, 57476			1069 bp upstream
Rad51	RAD51 recombinase			Intron
				Noncoding-Transcript-Variant
Rr563416	regulatory region 563416			1082 bp distal
Rr563417	regulatory region 563417			579 bp distal
Tssr19603	transcription start site region 19603			1017 bp downstream
Tssr25799	transcription start site region 25799			1130 bp upstream