rs29418438 SNP Detail

Summary

• ID
  rs29418438
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:96092765 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AGTGC CACTCACTTT ATTTGTGTCA
  W
  AATGGTAGAA TCTTGGTCCC AAAAG                                      
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J
ss38748942	mCV27576773	ABI	CRAMUS_MOUSE	f	SNP	A	T	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J
rs29418438					SNP	A	T	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:96092765 () rs orientation: forward

Symbol	Name	Function Class
Cpgi3625	CpG island 3625	1319 bp proximal
Gm11538	predicted gene 11538	1515 bp upstream
Gm30134	predicted gene, 30134	within coordinates
Gm56413	predicted gene, 56413	1628 bp upstream
Rr386513	regulatory region 386513	1181 bp downstream
Rr455321	regulatory region 455321	460 bp distal
Rr455322	regulatory region 455322	within coordinates
Rr455323	regulatory region 455323	434 bp proximal
Rr455324	regulatory region 455324	913 bp proximal
Rr455325	regulatory region 455325	1518 bp proximal
Tssr104437	transcription start site region 104437	1502 bp upstream