rs29388719 SNP Detail

Summary

• ID
  rs29388719
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr11:71642412 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GCAGTTGCAC CAGCCGCTTC TCCGCCGGAA TCCCGGGGAC
  GTCCGGTCTG ACTCCCCGGT CGGGCTGAGG GCAGGTTTTG GGGTGCGCAC AGCCTCCCTC
  S
  TAGGTGGAGA CGTTCGTCAG AAGCTGCTCC CCCCTCTCTC GTTCCATTCC CAAGCTAGGC
  TTCCGGTCAG CGAAGGGTTT TCTCCGGTCT CTTGATGAA                       
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	DBA/2J	LG/J	SM/J
ss38667747	mCV23438015	ABI	CRAMUS_MOUSE	f	SNP	C	G
ss132393507	ENSMUSSNP3330433	ENSEMBL	ENSEMBL_Sanger	f	SNP		G
ss323743712	CHEV_11_71565088	CHEVERUD	SCREENING_POP	f	SNP			C	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	DBA/2J	LG/J	SM/J
rs29388719					SNP	C	G	C	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:71642412 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Rr450536	regulatory region 450536			1498 bp distal
Rr450537	regulatory region 450537			200 bp distal
Rr450538	regulatory region 450538			221 bp distal
Rr450539	regulatory region 450539			within coordinates
Rr450540	regulatory region 450540			1127 bp proximal
Rr450541	regulatory region 450541			1157 bp proximal
Tssr102813	transcription start site region 102813			1649 bp downstream
Tssr102814	transcription start site region 102814			895 bp downstream
Tssr102815	transcription start site region 102815			591 bp downstream
Tssr102816	transcription start site region 102816			547 bp downstream
Tssr102817	transcription start site region 102817			527 bp downstream
Wscd1	WSC domain containing 1			Intron
				mRNA-UTR
				Noncoding-Transcript-Variant