rs29385328 SNP Detail

Summary

• ID
  rs29385328
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr11:29124409 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        AGGAAAAGGA TAAATATCAT TTGTATGGTA AGTCTCTCTG
  GGGTCCTTGT AATTTGTTTT GTTAGACAGG AAATTCAGTG AAACAGCTTT TGTTAAAGTT
  W
  AGTCTTCAAA TGGTCAATTA GACCTTAAAG GTTTTAGTTA CCTCATAGTC TGAATATTGA
  TTTCACATTT CCTTCCTTCT GAGGACATAT GGAGGTAGG                       
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss38665477	mCV24536167	ABI	CRAMUS_MOUSE	f	SNP	T	A	T	A
ss131889970	ENSMUSSNP6278294	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	A		A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs29385328					SNP	T	A	T	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:29124409 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
A630052C17Rik	RIKEN cDNA A630052C17 gene			851 bp upstream
Ppp4r3b	protein phosphatase 4 regulatory subunit 3B			Intron
				Noncoding-Transcript-Variant
Rr369144	regulatory region 369144			1426 bp downstream
Rr444150	regulatory region 444150			1509 bp distal
Rr444151	regulatory region 444151			417 bp distal
Tssr100691	transcription start site region 100691			1484 bp downstream
Tssr100692	transcription start site region 100692			1466 bp downstream
Tssr100693	transcription start site region 100693			1413 bp downstream
Tssr107208	transcription start site region 107208			1653 bp upstream