rs28319337 SNP Detail

Summary

• ID
  rs28319337
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:106964709 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GATCCAGTTT CCAGGACTGA
  TGCACACAAT ATGCCAAGTT ATCAACAGTC AGGAGGCAAA AACACTGAGA TGCCACCAGA
  CTTGCCTGCA TCATTCAGAA GTGCTAGCTG GACAAAGGGT ACTAAGGTGT CCTCACCCAG
  CAGCGTGCTA GCCAGGCAAC CCCTGTATGG GGCCAGGGAC TCGGAATTTC CTAAGGGCAC
  Y
  GCTGAGATCC TTATGTTTGC AACAGAACTT CTGCAGAGCA CGGGCATCCT GTCCACAGCC
  AAGGCTGGGA ACGGACAAGA GAGGTGGCAG CCACGAGAAT CCCGTTATCC AGAAAGCCCG
  AGCCTTCCAA AGCGCTCTCA ATGCTTTGTC CTGGGTCCCT GTGGTTTCAG TCACGTGGCC
  ATGCTTTTCT GCAGAGGTGG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
ss38286758	NES09609013	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
rs28319337					SNP	C	C	C	C	C	C	T	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38286758	NES09609013	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:106964709 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cdcp2	CUB domain containing protein 2			Intron
				mRNA-UTR
Rr596924	regulatory region 596924			626 bp proximal
Rr596925	regulatory region 596925			1602 bp proximal