rs28308142 SNP Detail

Summary

• ID
  rs28308142
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:106987073 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGCAGTTTGC ATCCCCGGGC
  CTCTTTCTGT AACAGCAGCG TCATACTGGA GCAGCGCATT TGTGTAAGGC CTCAGTCCGC
  CCTGATCACC CCTTCCCAGG ACTTTTTCAA ACGTGGTCAA TTCTGAAGCA CAGAGAGGTG
  GGACTAACAT GTAACTTTAG GGGGACACTA TCCGTTTACA GACATGTGGT AAGACAGTGG
  R
  CAGACGGTGA GAGGTCCGAG AAGGGCACTG AGTAGGGCAG TGGGCCTTTG GTCCAGCCAC
  TGGAGAAAAG GGTGAGGAAG AGGAGGAGAG CTAACTCCCC CTGGAATGCC CCCTGGAATG
  CCCCCCGGAA TGCCCAGGAA TGAGGAAGGG ATACTTGCTG GGGTTGAGAT GGGAAACAAA
  TGTAGACTGT GTTCATAGGA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss38286662	NES09607981	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs28308142					SNP	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38286662	NES09607981	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:106987073 () rs orientation: forward

Symbol	Name	Function Class
Gm12802	predicted gene 12802	within coordinates
Rr596931	regulatory region 596931	1065 bp distal
Rr596932	regulatory region 596932	194 bp distal
Rr596933	regulatory region 596933	717 bp proximal
Rr596934	regulatory region 596934	870 bp proximal
Tssr38220	transcription start site region 38220	1927 bp downstream