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rs28307017 SNP Detail
Summary
  • ID
    rs28307017
  • Variation Type
    SNP
  • Alleles
    A/G
Genome Location and Flanking Sequence
  • Location
    Chr4:101352784 (GRCm39)
  • SNP Orientation to the Genome
    forward
  • SNP Reference Flanking Sequence
                                                TAGGATTGTT GGTGAGTCCT
    GCCAAGCCAA GCACACTGAG TTCTGTCTGA AGTCGGTTGG GGGTATTTCG GAGGCTGTAA
    TTTCTGGTCT CTTTATTCAG CTTATTGATC TATGTGCCTT GTCCCTTTGC AGACACCACA
    CTGTTTCATT ACAGCACCAA GAACACATTG GGACCTTACA TGTTTACTGT GAGCACAGTC
    R
    CACTCTGAAC ACTGCCTGTT TTGACACCTG GGTTTCCAAT CCTATAGAGT GATTTTTCCC
    ACCTGAGTTT TTACATATAC TGTGTCATGG TCCTTTGTTC TGAAATACTT CAGTGTACAT
    TTTCTAAAAA TAAGAACTTT TTAAGGTAAC TGTCAACAAG CTTATAACTG ATAGATGATG
    ACCTATTTTT TTCATTTCAT                                            
    
    R = A/G
    

    Note: Sequence in lower case indicates low-complexity or repetitive sequence
    BLAST SNP flanking sequence against the mouse Genome
SNP Assays
and
SNP Consensus
Strain alleles of submitted assays, and consensus values for this SNP
Legend
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation Type
129S1/SvImJ
129X1/SvJ
A/J
AKR/J
BALB/cByJ
BTBR T<+> Itpr3/J
C57BL/6J
DBA/2J
FVB/NJ
LG/J
SM/J
ss38312440 NES09534055 PERLEGEN MM_PANEL2 f SNP G A G G G
ss45626427 mCV22691412 ABI CRAMUS_MOUSE f SNP G A G G
ss147123220 ENSMUSSNP7167404 ENSEMBL ENSEMBL_Sanger f SNP G A G
ss321230246 CHEV_4_101168192 CHEVERUD SCREENING_POP f SNP A A
SNP Consensus Information
SNP Consensus Type
129S1/SvImJ
129X1/SvJ
A/J
AKR/J
BALB/cByJ
BTBR T<+> Itpr3/J
C57BL/6J
DBA/2J
FVB/NJ
LG/J
SM/J
rs28307017 SNP G G A A G G G G G A A
Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation
Type
Alleles
ss38312440 NES09534055 PERLEGEN MM_PANEL f SNP A/G
Gene/Marker
Associations
and
Function
Classes
MGI genes/markers associated with the SNP
Location: Chr4:101352784 () rs orientation: forward
Symbol Name Transcript Protein Function
Class
Allele Residue Codon
Position
AA
Position
Cpgi14501 CpG island 14501 548 bp proximal
Dnajc6 DnaJ heat shock protein family (Hsp40) member C6 1044 bp upstream
Rr596165 regulatory region 596165 1692 bp distal
Rr596166 regulatory region 596166 571 bp proximal
Rr596167 regulatory region 596167 1072 bp proximal
Tssr37995 transcription start site region 37995 958 bp upstream
Tssr37996 transcription start site region 37996 1089 bp upstream

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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last database update
03/25/2025
MGI 6.24
The Jackson Laboratory