TAGGATTGTT GGTGAGTCCT GCCAAGCCAA GCACACTGAG TTCTGTCTGA AGTCGGTTGG GGGTATTTCG GAGGCTGTAA TTTCTGGTCT CTTTATTCAG CTTATTGATC TATGTGCCTT GTCCCTTTGC AGACACCACA CTGTTTCATT ACAGCACCAA GAACACATTG GGACCTTACA TGTTTACTGT GAGCACAGTC R CACTCTGAAC ACTGCCTGTT TTGACACCTG GGTTTCCAAT CCTATAGAGT GATTTTTCCC ACCTGAGTTT TTACATATAC TGTGTCATGG TCCTTTGTTC TGAAATACTT CAGTGTACAT TTTCTAAAAA TAAGAACTTT TTAAGGTAAC TGTCAACAAG CTTATAACTG ATAGATGATG ACCTATTTTT TTCATTTCAT R = A/G Note: Sequence in lower case indicates low-complexity or repetitive sequence |
Assay ID | Submitter SNP ID |
Submitter Handle |
Population | ss orientation |
Variation Type | 129S1/SvImJ |
129X1/SvJ |
A/J |
AKR/J |
BALB/cByJ |
BTBR T<+> Itpr3 |
C57BL/6J |
DBA/2J |
FVB/NJ |
LG/J |
SM/J |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
ss38312440 | NES09534055 | PERLEGEN | MM_PANEL2 | f | SNP | G | A | G | G | G | ||||||
ss45626427 | mCV22691412 | ABI | CRAMUS_MOUSE | f | SNP | G | A | G | G | |||||||
ss147123220 | ENSMUSSNP7167404 | ENSEMBL | ENSEMBL_Sanger | f | SNP | G | A | G | ||||||||
ss321230246 | CHEV_4_101168192 | CHEVERUD | SCREENING_POP | f | SNP | A | A | |||||||||
SNP Consensus Information | ||||||||||||||||
SNP | Consensus Type | 129S1/SvImJ |
129X1/SvJ |
A/J |
AKR/J |
BALB/cByJ |
BTBR T<+> Itpr3 |
C57BL/6J |
DBA/2J |
FVB/NJ |
LG/J |
SM/J |
||||
rs28307017 | SNP | G | G | A | A | G | G | G | G | G | A | A |
Assay ID | Submitter SNP ID |
Submitter Handle |
Population | ss orientation |
Variation Type |
Alleles |
---|---|---|---|---|---|---|
ss38312440 | NES09534055 | PERLEGEN | MM_PANEL | f | SNP | A/G |
Location: Chr4:101352784 () rs orientation: forward | ||||||||
Symbol | Name | Transcript | Protein | Function Class |
Allele | Residue | Codon Position |
AA Position |
---|---|---|---|---|---|---|---|---|
Cpgi14501 | CpG island 14501 | 548 bp proximal | ||||||
Dnajc6 | DnaJ heat shock protein family (Hsp40) member C6 | 1044 bp upstream | ||||||
Rr596165 | regulatory region 596165 | 1692 bp distal | ||||||
Rr596166 | regulatory region 596166 | 571 bp proximal | ||||||
Rr596167 | regulatory region 596167 | 1072 bp proximal | ||||||
Tssr37995 | transcription start site region 37995 | 958 bp upstream | ||||||
Tssr37996 | transcription start site region 37996 | 1089 bp upstream |
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO) |
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last database update 03/25/2025 MGI 6.24 |
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