rs28307017 SNP Detail

Summary

• ID
  rs28307017
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:101352784 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TAGGATTGTT GGTGAGTCCT
  GCCAAGCCAA GCACACTGAG TTCTGTCTGA AGTCGGTTGG GGGTATTTCG GAGGCTGTAA
  TTTCTGGTCT CTTTATTCAG CTTATTGATC TATGTGCCTT GTCCCTTTGC AGACACCACA
  CTGTTTCATT ACAGCACCAA GAACACATTG GGACCTTACA TGTTTACTGT GAGCACAGTC
  R
  CACTCTGAAC ACTGCCTGTT TTGACACCTG GGTTTCCAAT CCTATAGAGT GATTTTTCCC
  ACCTGAGTTT TTACATATAC TGTGTCATGG TCCTTTGTTC TGAAATACTT CAGTGTACAT
  TTTCTAAAAA TAAGAACTTT TTAAGGTAAC TGTCAACAAG CTTATAACTG ATAGATGATG
  ACCTATTTTT TTCATTTCAT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C57BL/6J	DBA/2J	FVB/NJ	LG/J	SM/J
ss38312440	NES09534055	PERLEGEN	MM_PANEL2	f	SNP	G			A	G	G			G
ss45626427	mCV22691412	ABI	CRAMUS_MOUSE	f	SNP		G	A				G	G
ss147123220	ENSMUSSNP7167404	ENSEMBL	ENSEMBL_Sanger	f	SNP		G	A					G
ss321230246	CHEV_4_101168192	CHEVERUD	SCREENING_POP	f	SNP										A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C57BL/6J	DBA/2J	FVB/NJ	LG/J	SM/J
rs28307017					SNP	G	G	A	A	G	G	G	G	G	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38312440	NES09534055	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:101352784 () rs orientation: forward

Symbol	Name	Function Class
Cpgi14501	CpG island 14501	548 bp proximal
Dnajc6	DnaJ heat shock protein family (Hsp40) member C6	1044 bp upstream
Rr596165	regulatory region 596165	1692 bp distal
Rr596166	regulatory region 596166	571 bp proximal
Rr596167	regulatory region 596167	1072 bp proximal
Tssr37995	transcription start site region 37995	958 bp upstream
Tssr37996	transcription start site region 37996	1089 bp upstream