rs28306983 SNP Detail

Summary

• ID
  rs28306983
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:101362128 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTGCCCCCTC TATTCAAAGC
  CAGTCCTGGC ATCTGTTTGC CTGATTTGGT AACTGGAGGC CGCAGGCTCC TGAAGATAGA
  ACACATTGTC CACCACTGTG GAATATTATT GAATGAAAGG GCGGGGCAGG GGGTCTGCAG
  CATCTCAGCC CCCCGAAGTG CTCCTTCTGG GCACGGTTTG ATTTAGTCCT TGGAGGAGGA
  R
  ATACCCAGTT TTTTGTTTTT GGTTTGTTTT GTTTGTTTTT TGTTTTTGTA TGGGCCTGAG
  GCTCATAAAA TGAATGTTAA GGAGCTATAA CAAACCCATT TATGATAATC AGCTTTTTGG
  CACTATTAAC AAAGTGTGTG AGATAACTTA CAGAGGGAAA AGATTTTTTA AAAGTATTTT
  GACATTTATT ACAAATGAAT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss38312404	NES09533362	PERLEGEN	MM_PANEL2	f	SNP	A	G	A	G	A	G	A	A	G	G	A	G	G	A
ss147123411	ENSMUSSNP1012959	ENSEMBL	ENSEMBL_Sanger	f	SNP		G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs28306983					SNP	A	G	A	G	A	G	A	A	G	G	A	G	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38312404	NES09533362	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:101362128 () rs orientation: forward

Symbol	Name	Function Class
Dnajc6	DnaJ heat shock protein family (Hsp40) member C6	Intron
Rr596168	regulatory region 596168	1440 bp proximal
Rr596169	regulatory region 596169	1622 bp proximal