rs28306982 SNP Detail

Summary

• ID
  rs28306982
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:101362242 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAAAGGGCGG GGCAGGGGGT
  CTGCAGCATC TCAGCCCCCC GAAGTGCTCC TTCTGGGCAC GGTTTGATTT AGTCCTTGGA
  GGAGGAAATA CCCAGTTTTT TGTTTTTGGT TTGTTTTGTT TGTTTTTTGT TTTTGTATGG
  GCCTGAGGCT CATAAAATGA ATGTTAAGGA GCTATAACAA ACCCATTTAT GATAATCAGC
  Y
  TTTTGGCACT ATTAACAAAG TGTGTGAGAT AACTTACAGA GGGAAAAGAT TTTTTAAAAG
  TATTTTGACA TTTATTACAA ATGAATGCCT GTGTGTAGGT GAAACTCAGA GGACGAATTT
  GGGGAGTTGG CTCTCACCTT CCATCAGGTG GGTTCCAAGC TTGAACTCCA GTTGTATGGT
  TTGGCATTAA GTGTCCTTGC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss38312403	NES09533363	PERLEGEN	MM_PANEL2	f	SNP	T	C	T	C	T	C	T	T	T	C	T	T	C	T	T
ss147123416	ENSMUSSNP3982652	ENSEMBL	ENSEMBL_Sanger	f	SNP		C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs28306982					SNP	T	C	T	C	T	C	T	T	T	C	T	T	C	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38312403	NES09533363	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:101362242 () rs orientation: forward

Symbol	Name	Function Class
Dnajc6	DnaJ heat shock protein family (Hsp40) member C6	Intron
Rr367654	regulatory region 367654	1960 bp upstream
Rr596168	regulatory region 596168	1326 bp proximal
Rr596169	regulatory region 596169	1508 bp proximal