rs28306979 SNP Detail

Summary

• ID
  rs28306979
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:101362965 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        ACTTC CTCTTTGTGG CCATACTTGG
  Y
  TCAAGGCTGC AGCAATGAGC AGATG                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss38312400	NES09533271	PERLEGEN	MM_PANEL2	f	SNP	C	T	C	T	C	T		C	C	C	T	C	C	T	C	C
ss45696313	mCV22691135	ABI	CRAMUS_MOUSE	f	SNP		T					C
ss147123421	ENSMUSSNP1525193	ENSEMBL	ENSEMBL_Sanger	f	SNP		T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs28306979					SNP	C	T	C	T	C	T	C	C	C	C	T	C	C	T	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38312400	NES09533271	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:101362965 () rs orientation: forward

Symbol	Name	Function Class
Dnajc6	DnaJ heat shock protein family (Hsp40) member C6	Intron
Rr367654	regulatory region 367654	1237 bp upstream
Rr596168	regulatory region 596168	603 bp proximal
Rr596169	regulatory region 596169	785 bp proximal
Rr596170	regulatory region 596170	1613 bp proximal
Rr596171	regulatory region 596171	1894 bp proximal
Tssr37997	transcription start site region 37997	1709 bp upstream
Tssr37998	transcription start site region 37998	1993 bp upstream