rs28306977 SNP Detail

Summary

• ID
  rs28306977
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:101364175 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTGTGGTGTA TGTATAGAGG
  GCGGAGAACT TTTTTTTTTT TTTTTTTTTT TTTGAGTGGT TCTCTCTGCT ATGTAGGTAC
  CAGGGATTGA GTTCAGGTGA CAGAGTCAGG CTTGGTGGCA AGCACCTTTA CATAGTGAGC
  CATCTCACTA GACCTGAAAA AGCAGTTTAC AGTCTTTTTT CTTTGAGGGC GGGCAGGAGA
  Y
  AAAGAGCTGC AAGGCAATGC CAGGGCCAAG CTTTGAATAT GCTAGGCAAG TATTGTACCA
  TCAGCCACGC TCCAGCCCCA ATGTTAAGTA AGGATGTTTA GAAGACTATG ATAATGCCGA
  CCCATTTTCA GTAAGTTAGA TGTCATCTCA TTTGGCCACC GTGTCTAAAA ATGGCACTTG
  TTAGTTACCT CATTGTCATG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss38312397	NES09533199	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	C	T	T	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs28306977					SNP	T	T	T	T	C	T	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38312397	NES09533199	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:101364175 () rs orientation: forward

Symbol	Name	Function Class
Cpgi14502	CpG island 14502	1916 bp proximal
Dnajc6	DnaJ heat shock protein family (Hsp40) member C6	Intron
Rr367654	regulatory region 367654	27 bp upstream
Rr596168	regulatory region 596168	586 bp distal
Rr596169	regulatory region 596169	404 bp distal
Rr596170	regulatory region 596170	403 bp proximal
Rr596171	regulatory region 596171	684 bp proximal
Rr596172	regulatory region 596172	1033 bp proximal
Tssr37997	transcription start site region 37997	499 bp upstream
Tssr37998	transcription start site region 37998	783 bp upstream
Tssr37999	transcription start site region 37999	806 bp upstream
Tssr38000	transcription start site region 38000	877 bp upstream
Tssr38001	transcription start site region 38001	953 bp upstream
Tssr38002	transcription start site region 38002	969 bp upstream
Tssr38003	transcription start site region 38003	1121 bp upstream