rs28306976 SNP Detail

Summary

• ID
  rs28306976
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:101364266 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTCAGGTGAC AGAGTCAGGC
  TTGGTGGCAA GCACCTTTAC ATAGTGAGCC ATCTCACTAG ACCTGAAAAA GCAGTTTACA
  GTCTTTTTTC TTTGAGGGCG GGCAGGAGAT AAAGAGCTGC AAGGCAATGC CAGGGCCAAG
  CTTTGAATAT GCTAGGCAAG TATTGTACCA TCAGCCACGC TCCAGCCCCA ATGTTAAGTA
  M
  GGATGTTTAG AAGACTATGA TAATGCCGAC CCATTTTCAG TAAGTTAGAT GTCATCTCAT
  TTGGCCACCG TGTCTAAAAA TGGCACTTGT TAGTTACCTC ATTGTCATGT GCCGTTATTC
  CTCACAGTGT TTGCCGCCCA TTATGGTTTC ATATTGCTTG TCTGAATGCT CTCACCTAAA
  GGTAAAAATT GTTATGAGGG                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss38312396	NES09533200	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	A	A	A	A	C	A	A	C	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs28306976					SNP	A	A	A	A	A	A	A	A	A	A	C	A	A	C	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38312396	NES09533200	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:101364266 () rs orientation: forward

Symbol	Name	Function Class
Cpgi14502	CpG island 14502	1825 bp proximal
Dnajc6	DnaJ heat shock protein family (Hsp40) member C6	Intron
Rr367654	regulatory region 367654	within coordinates
Rr596168	regulatory region 596168	677 bp distal
Rr596169	regulatory region 596169	495 bp distal
Rr596170	regulatory region 596170	312 bp proximal
Rr596171	regulatory region 596171	593 bp proximal
Rr596172	regulatory region 596172	942 bp proximal
Tssr37997	transcription start site region 37997	408 bp upstream
Tssr37998	transcription start site region 37998	692 bp upstream
Tssr37999	transcription start site region 37999	715 bp upstream
Tssr38000	transcription start site region 38000	786 bp upstream
Tssr38001	transcription start site region 38001	862 bp upstream
Tssr38002	transcription start site region 38002	878 bp upstream
Tssr38003	transcription start site region 38003	1030 bp upstream