rs28306975 SNP Detail

Summary

• ID
  rs28306975
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:101364574 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGTGCCGTTA TTCCTCACAG
  TGTTTGCCGC CCATTATGGT TTCATATTGC TTGTCTGAAT GCTCTCACCT AAAGGTAAAA
  ATTGTTATGA GGGCAGGGAC TTGTCTGCTC TTATCCTCTG GAGTTCCAAC AGGTAAAACA
  ATACCTGCCA AAAATGACTG TTTGTTGAGT AAGTGACAGA GGAAGGGTGT GATGTACCCG
  K
  GTTACAGAAT GATACAAAAT TCTGTGCGAA AAGAATGACT AAAAGGTTTG CTGGAAACTT
  CCTTGCCTCT CAGTAGAGGG GTCTACTGAT CTGGCTTCCT CATACCTGGT CCTGGCTGAG
  TCACTGACAC AGGCTGGTGT GCAAAGCTTC CTTGCTTATC AGCTTATATC TTGGTGAAGC
  AGCATTAGGA ACCTATGTCC                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss38312395	NES09533112	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	T	G	G	G	T	G	G	T	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs28306975					SNP	G	G	G	G	G	G	T	G	G	G	T	G	G	T	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38312395	NES09533112	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:101364574 () rs orientation: forward

Symbol	Name	Function Class
Cpgi14502	CpG island 14502	1517 bp proximal
Dnajc6	DnaJ heat shock protein family (Hsp40) member C6	Intron
Rr367654	regulatory region 367654	within coordinates
Rr596168	regulatory region 596168	985 bp distal
Rr596169	regulatory region 596169	803 bp distal
Rr596170	regulatory region 596170	4 bp proximal
Rr596171	regulatory region 596171	285 bp proximal
Rr596172	regulatory region 596172	634 bp proximal
Rr596173	regulatory region 596173	1820 bp proximal
Tssr37997	transcription start site region 37997	100 bp upstream
Tssr37998	transcription start site region 37998	384 bp upstream
Tssr37999	transcription start site region 37999	407 bp upstream
Tssr38000	transcription start site region 38000	478 bp upstream
Tssr38001	transcription start site region 38001	554 bp upstream
Tssr38002	transcription start site region 38002	570 bp upstream
Tssr38003	transcription start site region 38003	722 bp upstream