rs28306974 SNP Detail

Summary

• ID
  rs28306974
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:101364932 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATCAGCTTAT ATCTTGGTGA
  AGCAGCATTA GGAACCTATG TCCTCGAAGT AGACATGGGC CACTGTAGGG CACCCACTGC
  CTCTGTGTGG TGCCATTGAG AACAGAGCTG GGGGTCCGTT CCTGTACACT GCTCCATCTG
  CAGGATGTAG AGCTGTGCCT GACCCACCCA GAGTTTTTGT TGAGTAAATG AAGCAGCGAA
  R
  AGTACAAAGA GGACGCTCAG GGTTCTTCAT CCTTCCCAAA GTCACTTGAA AATAAGTCCA
  GACCACAGCG CAGCCCTTCC CAGAGCAACG TGAACCAAGT CTCTCTGGAA GCAAGAAGAA
  ACTAAGCAGT TGGATCCTCA CTCCAAGGAA GGAAGAAGGG CAAACCTAGG CTCCAGATCC
  GGTTCCATGC CATGTTTTGG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss38312393	NES09533116	PERLEGEN	MM_PANEL2	f	SNP	G	G	A	G	G	G	G	G	G	G		G	G	G	G		A
ss321230264	CHEV_4_101180340	CHEVERUD	SCREENING_POP	f	SNP											A					A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs28306974					SNP	G	G	A	G	G	G	G	G	G	G	A	G	G	G	G	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38312393	NES09533116	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:101364932 () rs orientation: forward

Symbol	Name	Function Class
Cpgi14502	CpG island 14502	1159 bp proximal
Dnajc6	DnaJ heat shock protein family (Hsp40) member C6	Intron
Rr367654	regulatory region 367654	within coordinates
Rr596168	regulatory region 596168	1343 bp distal
Rr596169	regulatory region 596169	1161 bp distal
Rr596170	regulatory region 596170	within coordinates
Rr596171	regulatory region 596171	52 bp distal
Rr596172	regulatory region 596172	276 bp proximal
Rr596173	regulatory region 596173	1462 bp proximal
Tssr37997	transcription start site region 37997	240 bp downstream
Tssr37998	transcription start site region 37998	26 bp upstream
Tssr37999	transcription start site region 37999	49 bp upstream
Tssr38000	transcription start site region 38000	120 bp upstream
Tssr38001	transcription start site region 38001	196 bp upstream
Tssr38002	transcription start site region 38002	212 bp upstream
Tssr38003	transcription start site region 38003	364 bp upstream