rs28306973 SNP Detail

Summary

• ID
  rs28306973
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:101365435 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCTCCTGCGT TGAGGGACTT
  CGCCCCCGGG ATCGCTGACT GTCTGTGAAT GACAAATCCA AAGTCAGGGG TTGCAGAGTC
  AGCCGGACTT GCCTGCTCTC GTGCAGCAGC GGGAGAAAAC AGAATGAAAG ATTCTGAAAA
  TAAAGGTAAG GGGCTGACAT CAGAGGGGCG GCTGGTAGAC GCTTGGGGGA GATGTCACGA
  Y
  GTGAATGTGC TTAGTTTGTG CTGATGGCTG GCTGCTTTGA TTACTGATGT ATCTTCGTAA
  TTTTTAGTTA TGTAATATAT GTCCTCTTTA AGTGACTGTT TTCTAAATAC CATGTCATTC
  AGTTTTCCAT TTTTTTTGCG TTACTAAAAA TATATTTTTA TTCTTTATTT AATCTTGGCC
  AAGTACACAT ATCTCACAGT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss38312392	NES09533118	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs28306973					SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38312392	NES09533118	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:101365435 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Dnajc6	DnaJ heat shock protein family (Hsp40) member C6			Intron
				Noncoding-Transcript-Variant
Rr367654	regulatory region 367654			within coordinates
Rr596168	regulatory region 596168			1846 bp distal
Rr596169	regulatory region 596169			1664 bp distal
Rr596170	regulatory region 596170			228 bp distal
Rr596171	regulatory region 596171			555 bp distal
Rr596172	regulatory region 596172			within coordinates
Rr596173	regulatory region 596173			959 bp proximal
Rr596174	regulatory region 596174			1881 bp proximal
Tssr37997	transcription start site region 37997			743 bp downstream
Tssr37998	transcription start site region 37998			466 bp downstream
Tssr37999	transcription start site region 37999			438 bp downstream
Tssr38000	transcription start site region 38000			370 bp downstream
Tssr38001	transcription start site region 38001			297 bp downstream
Tssr38002	transcription start site region 38002			206 bp downstream
Tssr38003	transcription start site region 38003			108 bp downstream