rs28286839 SNP Detail

Summary

• ID
  rs28286839
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:113893460 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGATGTAAAT ATGAGCAAGA
  GTAAAAATCC AATTCTGTGG CTCAATGATG CACCTCAGAA ATTCAGAGGT GGTTTTCACA
  TTCTGTTGAT TTGATTGATT TTCACCATAT GCCATGTCTA GACACAGAGT GTGCCAGGGA
  GTGCTAGAAT GGAAGAAACA GAGGAAAATG TTTCACACTG ATAGTATTTA ATATAAAAGT
  S
  TGCCACACAT GCAAAAGAGG AATTAAACAA AGGCTAAAGG GCTGGAAGAT GGAAGAGAGC
  CTTTCTCATT AGAGCACTTG GAAAGGTTTC ATAGCCTATG CAATTTGAAT TATGCCTCTA
  AGGGTTGGTT GAGTAATTGG TCCTTCCCAA TACCAACCCA CACCAAGTTG GCATACTTTT
  CTATGTAACT TAGAGGAAAG                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37667275	NES09034956	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	C	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs28286839					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	C	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37667275	NES09034956	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:113893460 () rs orientation: forward

Symbol	Name	Function Class
Actc1dt	actin, alpha, cardiac muscle 1 divergent transcript	1474 bp downstream
Rr562822	regulatory region 562822	1130 bp proximal
Tssr19457	transcription start site region 19457	1803 bp downstream
Tssr19458	transcription start site region 19458	1784 bp downstream