rs28277475 SNP Detail

Summary

• ID
  rs28277475
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:164603436 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTCTATTACT ATAAATCTAT
  GTCTGTGTGT GTGTGTGTGT GAGTATGTGT GTGGATGCTT ATGAAGATCA GAAGAGCATT
  ATATTCCCTT GAAGCTGGAA TTATAGGTGA TTGTAAGCTG CCTGGTATGA ATGCTAGAAT
  TGAAACTCAT CCTCTGTAAG ACCTCTGGTG CCTCGTGACC ACCGTGGGCA CAGGGATCTT
  W
  CTCATCCACA GGACTTCAGG ACCAGGTCTT CCGAAGGCTT CCCAGGTTTC TTTGTCCTTC
  TCACACCTTC AGCTTTCAAC CTTGAAACAC CTTCCTGCTT GCTGCCTGAA GTTGCCCAGG
  CATGTCAAAC ACAGCTTATC TAGGATATGA GGGCCATCTG GCTACAACAG ATGCCACCCC
  AGTGGTGCCT GGAGTTGTGT                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
ss37516219	NES08878627	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	A	T	A	T	T	T	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
rs28277475					SNP	T	T	T	T	T	T	A	T	A	T	T	T	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37516219	NES08878627	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:164603436 () rs orientation: forward

Symbol	Name	Function Class
Dnttip1	deoxynucleotidyltransferase, terminal, interacting protein 1	Intron
Gm11457	predicted gene 11457	within coordinates
Gm56329	predicted gene, 56329	143 bp upstream
Rr374205	regulatory region 374205	within coordinates
Rr569691	regulatory region 569691	1826 bp distal
Rr569692	regulatory region 569692	701 bp distal
Rr569693	regulatory region 569693	within coordinates