rs28277469 SNP Detail

Summary

• ID
  rs28277469
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:164605300 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTCAGGGTCT GAGCCTACTG
  CCACGCTTCC TTCATTTTTA GGGCCTTGGG GATGGGAGGC ACCAGAGGGA GAATCTACAT
  CAAGCACCCA CACCTCTTTA AGGTAGGTGA ACTGAACGCT GGAGGGGAGA GAGCCATCCA
  TGCCCCTGTG TGGTTGTAGA TGGCCTTGGA AACTGTGAGG CAGAGAAGCT GGGACATGCA
  S
  TGACCTGGTA GTCAAAACAT CTGGGATTTA CTTCCCTTTA GCTAGCACCT GCACCTTTTA
  CCCAGCTATA CCCAGCCCAG CTTAGAGCTC CGCTTGCCTG CTTCATGGGA TTGTTCCTGG
  AATGGTAGTG TAGCCAGGTG CAACCTGCAG CCCCCTGCAC TGTGCCTCTC AAGCTAAGAC
  TGGAACACAA GCACCATCTA                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37516213	NES08878616	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	C	G	G	C	G	G	C	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs28277469					SNP	G	G	G	G	G	G	C	G	G	C	G	G	C	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37516213	NES08878616	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:164605300 () rs orientation: forward

Symbol	Name	Function Class
Dnttip1	deoxynucleotidyltransferase, terminal, interacting protein 1	Intron
Gm11457	predicted gene 11457	within coordinates
Gm56329	predicted gene, 56329	1406 bp downstream
Rr374205	regulatory region 374205	635 bp downstream
Rr569693	regulatory region 569693	283 bp distal