rs28277036 SNP Detail

Summary

• ID
  rs28277036
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:174274840 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGTTTGGGAA TGAAGGAAAA
  GGGATAAGGC CCCTGGGTTA TTCCATAAAG CAGTCCATTG CCTTCCCTCC ACCCTGTGTC
  TGTCCCCCTG GTGGGATCTC TGGTCCCTGC TGGGTTTGCT CATCCAGAAC AAAGGACACC
  CAATTACAGC AGAGAATTCT TTCTCTGTAA GTAAGGCCCA TGAGACCATC CACATGCCAG
  S
  TGTGCACACG CACATGCCAC ATCCAGTCAT GCGGTGCTCT GCTTTATTTT ATTTGTTTGT
  TTGTTTACTT TTAAGATTTG AGATTGGGTG GGGCAGTGGC GGTGCACACC TTTAATCCCA
  GCACTTGGGA GGCAGAGGCA AGCAGATTTC TGAGTTCGAG GCCAGCCTGG TCTACAGAGT
  GAGTTCCAGG ACAGCCAGGG                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MSM/Ms	NZW/LacJ	SM/J	WSB/EiJ
ss37829768	NES08709741	PERLEGEN	MM_PANEL2	f	SNP	G		G	C	C	C		G	C	C	C			G		G
ss45219764	mCV23192347	ABI	CRAMUS_MOUSE	f	SNP		G	G				C		C
ss148343371	ENSMUSSNP5808522	ENSEMBL	ENSEMBL_Sanger	f	SNP		G	G						C				G
ss320627800	CHEV_2_174258548	CHEVERUD	SCREENING_POP	f	SNP												G			C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MSM/Ms	NZW/LacJ	SM/J	WSB/EiJ
rs28277036					SNP	G	G	G	C	C	C	C	G	C	C	C	G	G	G	C	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37829768	NES08709741	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:174274840 () rs orientation: forward

Symbol	Name	Function Class
Ctsz	cathepsin Z	Intron
Rr572121	regulatory region 572121	1466 bp proximal
Tssr28023	transcription start site region 28023	606 bp upstream
Tssr28024	transcription start site region 28024	501 bp downstream
Tssr28025	transcription start site region 28025	580 bp downstream