rs28277035 SNP Detail

Summary

• ID
  rs28277035
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:174274842 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GTCCCTGCTG GGTTTGCTCA TCCAGAACAA AGGACACCCA
  ATTACAGCAG AGAATTCTTT CTCTGTAAGT AAGGCCCATG AGACCATCCA CATGCCAGCT
  S
  TGCACACGCA CATGCCACAT CCAGTCATGC GGTGCTCTGC TTTATTTTAT TTGTTTGTTT
  GTTTACTTTT AAGATTTGAG ATTGGGTGGG GCAGTGGCGG                      
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	PWD/PhJ
ss37829767	NES08709743	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	C	C
SNP Consensus Information
SNP					Consensus Type	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	PWD/PhJ
rs28277035					SNP	G	G	G	G	G	G	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37829767	NES08709743	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:174274842 () rs orientation: forward

Symbol	Name	Function Class
Ctsz	cathepsin Z	Intron
Rr572121	regulatory region 572121	1464 bp proximal
Tssr28023	transcription start site region 28023	608 bp upstream
Tssr28024	transcription start site region 28024	499 bp downstream
Tssr28025	transcription start site region 28025	578 bp downstream