rs28277031 SNP Detail

Summary

• ID
  rs28277031
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:174275892 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGGCTAGAGA CCAGACACAC
  CATACGGGGA AGGCTGGGGT GGGCATCTCC AGGGACAAGG GCAGCCTAGG GGAGCCAGAT
  GAGTCTCAGT GGGGGGCCGG ACACCAGCAC TCAGTGCTCA CGTACTACCA CCCCCCCACC
  CCCACCCCCA CTAAGAGATA GATAGGATCA TCACAACATC CACCAGGGGA TGGCTGACCT
  R
  CTTCCTGAAA AGCCATCTTG TTCTTCACTC TTAAGCTCTA CACGCCCGCC CGCCCGCCCG
  TATAAAGCAA CCAAGCACCC CAGGCCATTT CCCCTATAGC CCCACCCACT CCTCCCCTAA
  AGCAAAGCTT ACCTTTGTTT TCTCTCCCTC CTTCACATGG TCTTCAGCTC TGAGCCATCC
  CTCACACGCC CTAGTCACAC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss37829761	NES08709699	PERLEGEN	MM_PANEL2	f	SNP	G		G	A	A	A		G	A	A	A		G	G		G
ss45274520	mCV23192353	ABI	CRAMUS_MOUSE	f	SNP	G	G	G				A
ss148343416	ENSMUSSNP4988839	ENSEMBL	ENSEMBL_Sanger	f	SNP		G	G
ss320627805	CHEV_2_174259600	CHEVERUD	SCREENING_POP	f	SNP												G			A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs28277031					SNP	G	G	G	A	A	A	A	G	A	A	A	G	G	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37829761	NES08709699	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:174275892 () rs orientation: forward

Symbol	Name	Function Class
Ctsz	cathepsin Z	Intron
Rr572121	regulatory region 572121	414 bp proximal
Tssr28023	transcription start site region 28023	1658 bp upstream
Tssr28024	transcription start site region 28024	527 bp upstream
Tssr28025	transcription start site region 28025	447 bp upstream