rs28277029 SNP Detail

Summary

• ID
  rs28277029
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:174276050 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TAGATAGGAT CATCACAACA
  TCCACCAGGG GATGGCTGAC CTACTTCCTG AAAAGCCATC TTGTTCTTCA CTCTTAAGCT
  CTACACGCCC GCCCGCCCGC CCGTATAAAG CAACCAAGCA CCCCAGGCCA TTTCCCCTAT
  AGCCCCACCC ACTCCTCCCC TAAAGCAAAG CTTACCTTTG TTTTCTCTCC CTCCTTCACA
  Y
  GGTCTTCAGC TCTGAGCCAT CCCTCACACG CCCTAGTCAC ACTCCACCAC CTCAGAGGGC
  TCGCCACGGA ACAACGCACA AGCAGACCTT GTCTCGCCAC CATTTTAGAC CTGTTTCTGT
  GCCTGGGATA TCTTTCTGTG CTACAGGCAA GCAGGCTCCC AGCTGTCCAA GGCAGATGGA
  CCCTCCCTCC TGTCTCCTTC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NZW/LacJ	SM/J	WSB/EiJ
ss37829759	NES08709704	PERLEGEN	MM_PANEL2	f	SNP	C		C	T	T	T		T	T	T		C		C
ss45356628	mCV23192360	ABI	CRAMUS_MOUSE	f	SNP	C	C					T
ss148343427	ENSMUSSNP694532	ENSEMBL	ENSEMBL_Sanger	f	SNP		C
ss320627807	CHEV_2_174259758	CHEVERUD	SCREENING_POP	f	SNP											C		T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NZW/LacJ	SM/J	WSB/EiJ
rs28277029					SNP	C	C	C	T	T	T	T	T	T	T	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37829759	NES08709704	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:174276050 () rs orientation: forward

Symbol	Name	Function Class
Ctsz	cathepsin Z	Intron
Rr572121	regulatory region 572121	256 bp proximal
Rr572122	regulatory region 572122	1862 bp proximal
Tssr28023	transcription start site region 28023	1816 bp upstream
Tssr28024	transcription start site region 28024	685 bp upstream
Tssr28025	transcription start site region 28025	605 bp upstream