rs28277026 SNP Detail

Summary

• ID
  rs28277026
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:174276180 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTTCCCCTAT AGCCCCACCC
  ACTCCTCCCC TAAAGCAAAG CTTACCTTTG TTTTCTCTCC CTCCTTCACA TGGTCTTCAG
  CTCTGAGCCA TCCCTCACAC GCCCTAGTCA CACTCCACCA CCTCAGAGGG CTCGCCACGG
  AACAACGCAC AAGCAGACCT TGTCTCGCCA CCATTTTAGA CCTGTTTCTG TGCCTGGGAT
  R
  TCTTTCTGTG CTACAGGCAA GCAGGCTCCC AGCTGTCCAA GGCAGATGGA CCCTCCCTCC
  TGTCTCCTTC CCCCAAGCTC GGCTCCCTCT AGCCTTCTCC CTCTGCATCC CCAGCAGCAG
  GTCACCTTTC CATGAGAGGG CACCTTCAAG CACAGACCTC TTTCCCAGAG TTCAATGGCT
  CCACGCTTTC CCTCTCAGCA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37829756	NES08709711	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	G	G	A	A	G	G	A	G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs28277026					SNP	A	A	A	A	G	G	A	A	G	G	A	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37829756	NES08709711	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:174276180 () rs orientation: forward

Symbol	Name	Function Class
Ctsz	cathepsin Z	Intron
Rr572121	regulatory region 572121	126 bp proximal
Rr572122	regulatory region 572122	1732 bp proximal
Tssr28023	transcription start site region 28023	1946 bp upstream
Tssr28024	transcription start site region 28024	815 bp upstream
Tssr28025	transcription start site region 28025	735 bp upstream