rs28277025 SNP Detail

Summary

• ID
  rs28277025
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:174276192 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCCCACCCAC TCCTCCCCTA
  AAGCAAAGCT TACCTTTGTT TTCTCTCCCT CCTTCACATG GTCTTCAGCT CTGAGCCATC
  CCTCACACGC CCTAGTCACA CTCCACCACC TCAGAGGGCT CGCCACGGAA CAACGCACAA
  GCAGACCTTG TCTCGCCACC ATTTTAGACC TGTTTCTGTG CCTGGGATAT CTTTCTGTGC
  Y
  ACAGGCAAGC AGGCTCCCAG CTGTCCAAGG CAGATGGACC CTCCCTCCTG TCTCCTTCCC
  CCAAGCTCGG CTCCCTCTAG CCTTCTCCCT CTGCATCCCC AGCAGCAGGT CACCTTTCCA
  TGAGAGGGCA CCTTCAAGCA CAGACCTCTT TCCCAGAGTT CAATGGCTCC ACGCTTTCCC
  TCTCAGCACT GGGAGAGAGG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss37829755	NES08709713	PERLEGEN	MM_PANEL2	f	SNP	C		C	T	T	T	T	C	T	T	T		C	C	C	C		C
ss148343431	ENSMUSSNP7216990	ENSEMBL	ENSEMBL_Sanger	f	SNP		C
ss320627808	CHEV_2_174259900	CHEVERUD	SCREENING_POP	f	SNP												C					T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs28277025					SNP	C	C	C	T	T	T	T	C	T	T	T	C	C	C	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37829755	NES08709713	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:174276192 () rs orientation: forward

Symbol	Name	Function Class
Ctsz	cathepsin Z	Intron
Rr572121	regulatory region 572121	114 bp proximal
Rr572122	regulatory region 572122	1720 bp proximal
Tssr28023	transcription start site region 28023	1958 bp upstream
Tssr28024	transcription start site region 28024	827 bp upstream
Tssr28025	transcription start site region 28025	747 bp upstream