rs28277023 SNP Detail

Summary

• ID
  rs28277023
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:174276411 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGCTGTCCAA GGCAGATGGA
  CCCTCCCTCC TGTCTCCTTC CCCCAAGCTC GGCTCCCTCT AGCCTTCTCC CTCTGCATCC
  CCAGCAGCAG GTCACCTTTC CATGAGAGGG CACCTTCAAG CACAGACCTC TTTCCCAGAG
  TTCAATGGCT CCACGCTTTC CCTCTCAGCA CTGGGAGAGA GGGATTCACC ATTGCGTGCA
  Y
  GTCTCTCTTT GGCCTTTCAA GCCACTCTTG TCAGGGTCCC AATCTCCACA CCACCCATCC
  ATCCAAATCC CTTCTCCATC CTCATCTGAC AGCAGAGGGG CCACCCCGGT CTTCTGAAGC
  GCCTGGCATG TCTGCCTGGC ATGGCTCTTC TGCACTCCAC CTCAGAAGAG TGCTTCTCAC
  TCTGACTTGC TGAGGTCCCT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37829753	NES08709718	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	T	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs28277023					SNP	C	C	C	C	T	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37829753	NES08709718	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:174276411 () rs orientation: forward

Symbol	Name	Function Class
Ctsz	cathepsin Z	Intron
Rr572121	regulatory region 572121	84 bp distal
Rr572122	regulatory region 572122	1501 bp proximal
Tssr28024	transcription start site region 28024	1046 bp upstream
Tssr28025	transcription start site region 28025	966 bp upstream