rs28277020 SNP Detail

Summary

• ID
  rs28277020
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:174276803 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAGGTCCCTT TCTTCTTCTC
  AGGTCCCTCT GGTGACCTCA GCTAAGACCC GCTGTCAGGG GCTGTCTGGA TAACCTCAGG
  CCTGCCATCT TCTAGACCTG ACTTAATGTC TAGCTCCAAC CTGACCAACC AACCAGCTCC
  AGACTTCACA GGCTTCTTGA GATGGCCTGT CTACACAACC ACGCTCTGCG TCCTTAGCCT
  Y
  AGTCCCATCA TGATATCTCC ATTCACACCT CTGCGCACCG TGCAGTACAC ACAGTAGGAC
  TGGCCAGCAG GAGCGAGTTC TGCTTTGTGG GGCTTGTGCC ATGGCACTGG AGGCAAGGCA
  GAGGGCAAGC AGGACAACAC TGCAAGGAGA TGTGGTGGGG ACCATCCGGG GGCTAAGTTA
  TCATGTACAT AGCACAGCCT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss37829750	NES08709722	PERLEGEN	MM_PANEL2	f	SNP	C	C	T	T	T		C	T	T	T		C	C	C	C		C
ss45358715	mCV23192373	ABI	CRAMUS_MOUSE	f	SNP		C				T		T
ss148343437	ENSMUSSNP3788362	ENSEMBL	ENSEMBL_Sanger	f	SNP		C						T
ss320627809	CHEV_2_174260511	CHEVERUD	SCREENING_POP	f	SNP											C					T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs28277020					SNP	C	C	T	T	T	T	C	T	T	T	C	C	C	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37829750	NES08709722	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:174276803 () rs orientation: forward

Symbol	Name	Function Class
Ctsz	cathepsin Z	Intron
Rr572121	regulatory region 572121	476 bp distal
Rr572122	regulatory region 572122	1109 bp proximal
Tssr28024	transcription start site region 28024	1438 bp upstream
Tssr28025	transcription start site region 28025	1358 bp upstream