rs28253747 SNP Detail

Summary

• ID
  rs28253747
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:111113033 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGCAGTGTTC CGGCTGAGCC
  ATTAGCTCAT TAGATAGAGG CGAGTGTCCA CATTGATCTG TTTATCTCCC AGGCCCTGCT
  GCTGGAGAAA GGCCAGCTGC TCCTGAGCGC TGCCTCTCCT CTTGACTCAT CATCCCAAAC
  ATCAGGGGAG ACAGGCTCCT TTGTCCCTTT CAACTTCAAG GTCACTTCAG TGCAAAGCAG
  R
  AAAGAGGCCA CAGCAGTGCT TTCTGAGGGC TTTAGTTGCT ACATCCTCTC CTTCTTCCTT
  GTCAGCTGGC CTTGGAAATG ACCTTATAGA AATGAAAAGG ACTGTTGTTG AAAATGACAG
  AAATTACAAG TGGACAAATA TCCATTTGAG GCAGGTGTCC CTTCCTGCCT GCTAGTTCTA
  TGGCCTTGGA GAATATACCT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss37706571	NES09225206	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	A	G	G	G		G	A	G	G		G
ss321261514	CHEV_4_110928441	CHEVERUD	SCREENING_POP	f	SNP									A					G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs28253747					SNP	G	G	G	G	A	G	G	G	A	G	A	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37706571	NES09225206	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:111113033 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Agbl4	ATP/GTP binding protein-like 4			Intron
				Noncoding-Transcript-Variant
Rr407178	regulatory region 407178			within coordinates
Rr597443	regulatory region 597443			15 bp distal
Rr597444	regulatory region 597444			1288 bp proximal