rs28253743 SNP Detail

Summary

• ID
  rs28253743
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:111113956 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCCAGGACTG CTAGAATTAC
  AGCATTCCTT TTCAATTACA TTTCCCAAAA TTGACTGTTT TTATCTTCTG ATGCTTTCTT
  CTCTACTACT TCTATTGACA TTTTACTTCA TTATTGTATT TTATATTCTC ATTGTAGAAA
  ATTATAAAGG TAGAATAATT TAAATTTTCA CTTCTAGTAA TCCAACAAAT GAACATCACT
  Y
  CCTATGTTTA TTAAACTCTT CCTCTTTATA TCACTACACA TTTTTAATAA AATGGGTGTC
  ATACTAGATA ATTTTAACAT GGTCATTTCC CTGTGATAGT CTTCAAAAGT GTGATTTTAA
  GAGCTTCACA ATATTTCATA TTGTGTGTGA ATATTTATGT TATCATTCCA TCTTATTCAA
  CATTTACACA ATTTTCTAAT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	AKR/J	DBA/2J	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
ss37706567	NES09225179	PERLEGEN	MM_PANEL2	f	SNP	T	T		C	C	T		T
ss321261516	CHEV_4_110929364	CHEVERUD	SCREENING_POP	f	SNP			C				T
SNP Consensus Information
SNP					Consensus Type	AKR/J	DBA/2J	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
rs28253743					SNP	T	T	C	C	C	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37706567	NES09225179	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:111113956 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Agbl4	ATP/GTP binding protein-like 4			Intron
				Noncoding-Transcript-Variant
Rr407178	regulatory region 407178			within coordinates
Rr597443	regulatory region 597443			938 bp distal
Rr597444	regulatory region 597444			365 bp proximal