rs28253742 SNP Detail

Summary

• ID
  rs28253742
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:111113981 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCCTTTTCAA TTACATTTCC
  CAAAATTGAC TGTTTTTATC TTCTGATGCT TTCTTCTCTA CTACTTCTAT TGACATTTTA
  CTTCATTATT GTATTTTATA TTCTCATTGT AGAAAATTAT AAAGGTAGAA TAATTTAAAT
  TTTCACTTCT AGTAATCCAA CAAATGAACA TCACTTCCTA TGTTTATTAA ACTCTTCCTC
  Y
  TTATATCACT ACACATTTTT AATAAAATGG GTGTCATACT AGATAATTTT AACATGGTCA
  TTTCCCTGTG ATAGTCTTCA AAAGTGTGAT TTTAAGAGCT TCACAATATT TCATATTGTG
  TGTGAATATT TATGTTATCA TTCCATCTTA TTCAACATTT ACACAATTTT CTAATTTTTA
  TTATTATAGT TTAAGAAAGA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	AKR/J	DBA/2J	LG/J	MOLF/EiJ	NZW/LacJ	SM/J	WSB/EiJ
ss37706566	NES09225180	PERLEGEN	MM_PANEL2	f	SNP	T	T		C	T		C
ss321261517	CHEV_4_110929389	CHEVERUD	SCREENING_POP	f	SNP			C			T
SNP Consensus Information
SNP					Consensus Type	AKR/J	DBA/2J	LG/J	MOLF/EiJ	NZW/LacJ	SM/J	WSB/EiJ
rs28253742					SNP	T	T	C	C	T	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37706566	NES09225180	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:111113981 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Agbl4	ATP/GTP binding protein-like 4			Intron
				Noncoding-Transcript-Variant
Rr407178	regulatory region 407178			within coordinates
Rr597443	regulatory region 597443			963 bp distal
Rr597444	regulatory region 597444			340 bp proximal