rs28253740 SNP Detail

Summary

• ID
  rs28253740
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:111114406 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTCCTTAGGA TAGCACTCAT
  TCAATCCTTT TCAAAAGCAC TGATAATTTA TTATTTTCTT TAAAAAATCA CCACTCTACC
  CCTAAGTCCT GGATTTCATG CTGTTTTTAG AAGCTGGGAT ACCCCCTGCT GGAGGTAACA
  GAACATGGCC CCAAACTGTT ACAAATATCC TGACATGGAA CTGTAGAGGC TAAGCACAAG
  R
  CTTCAAAATG TGGCATCTGC AAGGTGTGTC TGTCATCACT CCAGGTTTCT TTCAGACAGG
  AGACTATCAA AGACAAGAAC TGTGCCTTTG TGTACACATG TACAAGCATA CATACCACAT
  ACATGGCCCA CCCCACCACC ACATACACAT GCACACATGA ACACACACCA GGAAATTCAA
  ATGGAATACC CAAGTGAAAA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37706564	NES09225087	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	A	G	G	A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs28253740					SNP	G	G	G	G	G	G	G	G	A	G	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37706564	NES09225087	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:111114406 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Agbl4	ATP/GTP binding protein-like 4			Intron
				Noncoding-Transcript-Variant
Rr407178	regulatory region 407178			78 bp distal
Rr597443	regulatory region 597443			1388 bp distal
Rr597444	regulatory region 597444			64 bp distal