rs28253739 SNP Detail

Summary

• ID
  rs28253739
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:111114486 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCTAAGTCCT GGATTTCATG
  CTGTTTTTAG AAGCTGGGAT ACCCCCTGCT GGAGGTAACA GAACATGGCC CCAAACTGTT
  ACAAATATCC TGACATGGAA CTGTAGAGGC TAAGCACAAG GCTTCAAAAT GTGGCATCTG
  CAAGGTGTGT CTGTCATCAC TCCAGGTTTC TTTCAGACAG GAGACTATCA AAGACAAGAA
  Y
  TGTGCCTTTG TGTACACATG TACAAGCATA CATACCACAT ACATGGCCCA CCCCACCACC
  ACATACACAT GCACACATGA ACACACACCA GGAAATTCAA ATGGAATACC CAAGTGAAAA
  TTCACCAAGA AAGTTCAACT TAACAGTGAA TTTCAAAGCA AAGAAGTAAG CTGGGGCCAG
  AGTCTCCCAG CTGTACTCTC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	AKR/J	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss37706563	NES09225089	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C		C	T	C	C		C
ss321261520	CHEV_4_110929894	CHEVERUD	SCREENING_POP	f	SNP							T					C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	AKR/J	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs28253739					SNP	C	C	C	C	C	C	T	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37706563	NES09225089	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:111114486 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Agbl4	ATP/GTP binding protein-like 4			Intron
				Noncoding-Transcript-Variant
Rr407178	regulatory region 407178			158 bp distal
Rr597443	regulatory region 597443			1468 bp distal
Rr597444	regulatory region 597444			144 bp distal