rs28253735 SNP Detail

Summary

• ID
  rs28253735
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:111114877 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTGTACTCTC TCCTATGCAT
  CTCTATCCCC GTGGCAAAAC TGTCAGAGTT AGAGGACGTT TCTGTGGCTA GAGATGTTCT
  AGACCAGAAA CCTGCCCATC GGGACACTCG ATGGATAGAT GGAGCTAGAT GGGAAAGCTT
  ATGCTCTAAC TGCAGTGGAA ACATTTTCTG CACTTTACTT TTCCAGGAAC AATTGCACGA
  W
  GTAGCTGATC TTGCAGAAAA TCTATTTCTC TGACATTCTT CAATTGAGCT GCCCTCAATC
  AATCATTCAT CAAACATTGA CAGAGCTCTT GCCCTGGGCT AGACACTTAG CTGAATCAAA
  CACAGTCCCT ACTATAAAGG TGTTTGAGGG GCTGGTGAAA GATCAATCCA TTTCCCTTTG
  CCTCCCTTCA CTCTTTCTAG                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37706559	NES09225097	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	A	A	T	A	A	T	A
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs28253735					SNP	A	A	A	A	A	A	A	A	T	A	A	T	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37706559	NES09225097	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:111114877 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Agbl4	ATP/GTP binding protein-like 4			Intron
				Noncoding-Transcript-Variant
Rr407178	regulatory region 407178			549 bp distal
Rr597443	regulatory region 597443			1859 bp distal
Rr597444	regulatory region 597444			535 bp distal