rs28253729 SNP Detail

Summary

• ID
  rs28253729
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:111115503 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTGCCCCATT CGCCAGAACT
  GCTTGAAAGG CTGGAAGCCA CTCTTAGTAT TTCAAGTATT TTCAGGAACA TACTGTGTGA
  ACTTGTGTTC ATTGTGATTG ACTTCAACAT CGTGCTTCAT AATATCACAG TAGCCAAGAC
  AATCCCTAAA GTCATTGCTA CCATATGCTA GAGATAGAAG AGATAAACAG GACAAAACTT
  Y
  TTTGCTGTTA CAGAACAGTG TAAGAACATT CTAGAAGAAG AAAGGAACAA TTGTCTAGGC
  ATAAAATGAG ATGGAGAAGG CACAGTTTGT GGAGCTGTAT GGGGTAAGGT ACAGTTCTGT
  GTCAATGCAT GTACCTTAGC TTTGCCATGC CTCCTAGTCC TTTTCTGAGT GCCCATCTTT
  GTTTTCTTCC TATCCCCTAT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss37706553	NES09225111	PERLEGEN	MM_PANEL2	f	SNP	T	C	T	C	C	T	T		C	C	T	C		C
ss321261523	CHEV_4_110930911	CHEVERUD	SCREENING_POP	f	SNP								C					C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs28253729					SNP	T	C	T	C	C	T	T	C	C	C	T	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37706553	NES09225111	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:111115503 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Agbl4	ATP/GTP binding protein-like 4			Intron
				Noncoding-Transcript-Variant
Rr407178	regulatory region 407178			1175 bp distal
Rr597444	regulatory region 597444			1161 bp distal