rs28253725 SNP Detail

Summary

• ID
  rs28253725
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:111116112 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCATAACTAA CTGAACAAGC
  TTTCATTGTG TTTGCTCAAC AGGTATAGGG AGCCCAAGAA GCTACAGGTG CTACTACTGC
  CAAGGAGCTT CATCTCCCCT TGAAAGTCAT TTCCACTGAT GCATAATCCT TGTTTTGATG
  AAACTTGTCC TTCAATTTTG ACCTTATTCT TTGATTTAAT GTAAGGAACT TTGATTTGAA
  K
  AGTAGGATGT TTTCAACAGT AACCCAAAAG TCATTAGCAA TGGAGACATT GTTTACAGTT
  TGAAAATCAT GTAGCTGTTT GATCATTCAT TGAATGTTAT AAAGACTTAG TCTATGCAAA
  GCATTGCTAT TAACTTTGTG TCATATCAGT AATCACTGTG CATATTTTAG TGAAGTTTGT
  AACTTACTGG AGGATACAGA                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37706549	NES09225022	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	T	G	G	T	G
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs28253725					SNP	G	G	G	G	G	G	G	T	G	G	T	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37706549	NES09225022	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:111116112 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Agbl4	ATP/GTP binding protein-like 4			Intron
				Noncoding-Transcript-Variant
Rr407178	regulatory region 407178			1784 bp distal
Rr597444	regulatory region 597444			1770 bp distal