rs28252610 SNP Detail

Summary

• ID
  rs28252610
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:111331833 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGGATGTCTG GCTCTCACCT
  CCATCCCTTT AAAGAGAGTC CTGTGATAAT GGAAAAGGCA CCAGCGTTTG TTCTGAGTAA
  ATAGGCCAGG CTCCCATACC ATCAGGAATG GGAACTCAAT GCCCCTCCCA CCTGCTGCTC
  AGCTGTGATC CAGTCACCGC AATGACATCT GTCCTAACAT GCTGGGTTAA ACAGCCAGTT
  R
  TGCAGGGACC TGAGCAAGCT CGGTGCACTG AAGAGGCTGC TCAGATCCTA GGAAATACTG
  CCGCCCAGGC AGGCCCTATG TAAGGATGGG CACAGGGTCT TACAGCTCAC ATTTCCGCAA
  GCCCTTGACA TGGTTGAGGC TCCTGATGCT AGGGAGCCCT CCAGTGTTGT CCTCATCTAG
  CTCATATGCA GACTACCAGA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MSM/Ms	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss37705629	NES09220469	PERLEGEN	MM_PANEL2	f	SNP	G		G	G	G	G	G	A	G	G	G		G	G	G
ss147204194	ENSMUSSNP6653830	ENSEMBL	ENSEMBL_Sanger	f	SNP		G	G						G			A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MSM/Ms	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs28252610					SNP	G	G	G	G	G	G	G	A	G	G	G	A	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37705629	NES09220469	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:111331833 () rs orientation: forward

Symbol	Name	Function Class
Agbl4	ATP/GTP binding protein-like 4	Intron
Rr597468	regulatory region 597468	1267 bp distal
Rr597469	regulatory region 597469	750 bp proximal