rs28252608 SNP Detail

Summary

• ID
  rs28252608
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:111331987 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CACCGCAATG ACATCTGTCC
  TAACATGCTG GGTTAAACAG CCAGTTGTGC AGGGACCTGA GCAAGCTCGG TGCACTGAAG
  AGGCTGCTCA GATCCTAGGA AATACTGCCG CCCAGGCAGG CCCTATGTAA GGATGGGCAC
  AGGGTCTTAC AGCTCACATT TCCGCAAGCC CTTGACATGG TTGAGGCTCC TGATGCTAGG
  K
  AGCCCTCCAG TGTTGTCCTC ATCTAGCTCA TATGCAGACT ACCAGAGCTT GGTCTCTAGA
  AAAACCTTGT TCTTCTCATC CTGGGCCCCT TAGGCTCCAG TCTCTCCTAA GCAGAGCTGG
  GGGCTGATCA GCTGACACTA GGACCCAGCC AACCCTCACT CTCTCCAACC TTTCCATGAT
  GAATGAATCC CCTGAAGCCC                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ
ss37705627	NES09220471	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	T	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ
rs28252608					SNP	G	G	G	G	G	G	T	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37705627	NES09220471	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:111331987 () rs orientation: forward

Symbol	Name	Function Class
Agbl4	ATP/GTP binding protein-like 4	Intron
Rr597468	regulatory region 597468	1421 bp distal
Rr597469	regulatory region 597469	596 bp proximal