rs28252604 SNP Detail

Summary

• ID
  rs28252604
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:111332364 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGATGAATGA ATCCCCTGAA
  GCCCCAGCTG CTGTCCAGAA CATTCGAACG TTCTTCCACA GTCCTCCTGT TTGCAGCATG
  GCTGTCTCTG AGAGTTGCTT GCCCTCCTTC AGTACCCTTA CATGAGTATT CTTCCTGTGG
  GAAACACCTT GTCTGGAAAT GCTGAGTCCC AGGCTGACCC AAGTGTGTCT TTTCTGGGAC
  Y
  TTGTGGATCT ATCACTGCTC ACTTTAGTGA ATTCCATTTA TGCTTTGGTG TTGTTGTTTG
  TTTGTCTTCT TGTTTTCTTG GAGACAGGGT CTTAACCATA TAGTCCTGGC TGGCCTGGAA
  CTAACAGAGC TCTGCCTGTC TCTGCCTCCT GAGCGCTGGG ATAAAAGTCA TGTGCCATCG
  CGCTGAGGTT TCTGTTTGGT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MSM/Ms	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss37705623	NES09220476	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T	T		T	T	T
ss147204240	ENSMUSSNP7182827	ENSEMBL	ENSEMBL_Sanger	f	SNP		T						T			C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MSM/Ms	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs28252604					SNP	T	T	T	T	T	T	C	T	T	T	C	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37705623	NES09220476	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:111332364 () rs orientation: forward

Symbol	Name	Function Class
Agbl4	ATP/GTP binding protein-like 4	Intron
Rr597468	regulatory region 597468	1798 bp distal
Rr597469	regulatory region 597469	219 bp proximal