rs28252603 SNP Detail

Summary

• ID
  rs28252603
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:111332632 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCTTGTTTTC TTGGAGACAG
  GGTCTTAACC ATATAGTCCT GGCTGGCCTG GAACTAACAG AGCTCTGCCT GTCTCTGCCT
  CCTGAGCGCT GGGATAAAAG TCATGTGCCA TCGCGCTGAG GTTTCTGTTT GGTTTTGCAG
  CTGTCCTGCC TACCAGACCA AGACAAGAAC TTCTGAAGGA CAGTCTACCT TGCTCAGTAT
  K
  GTCCTTGACC CAGCACAAAC CTGGAAAAAG GGCATCAGTG AGAATCAGTC CTGAGCTGCT
  GCGGTTTCCC AGTCACAGGG TACCCCGCAC ATCAAGCACT GGCAGCAGGC TCAGATGGGG
  CCAGGGAGAT GGGGTAGGAC AGGGCCTCCA GGGTGCTGCC ACACCCCCTG GGGCTACTGT
  CTTGGTGCCT TTCTTGTGTG                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss37705622	NES09220374	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs28252603					SNP	G	G	G	G	G	G	G	G	G	G	G	G	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37705622	NES09220374	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:111332632 () rs orientation: forward

Symbol	Name	Function Class
Agbl4	ATP/GTP binding protein-like 4	Intron
Rr597469	regulatory region 597469	within coordinates