rs28252598 SNP Detail

Summary

• ID
  rs28252598
• Variation Type
  SNP
• Alleles
  A/C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:111333550 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GATGTGTATG ATAAGCAATG
  TGTCCGTCAC ATGATACACA TACAACTGAA GTGTTAGAAG TGAAGGGACA GAGGAGGGAA
  GGGAAAAGAC AGGGATCTGG AAAACTGATG TATATGATGC CTCTGTAAGA GCCTTGAGGA
  AGATAGTGGA TGCCTTTGTG TGTGAGAGGA GGATCTTAGA CATGAGCTCT CAGGATTCAG
  H
  GAGAAGAAGG AGAGACAGGA GAGCACTAAG AGGAGTCCAG GGTGACTGTG ATGGAGAGAG
  AGAGGATGAT GAGACTGGAA GACCAGGTGG AACCAGGGCT CAGGAGCCTT GGGAACACAG
  GAGGGTTTTC AGCAAGGATC TAGAAGCATC ATTTGAAAGC ACTTCTGGGT ATGTTGTGGA
  GGACTGATTG GAGAGTGCTC                                            
  
  H = A/C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
ss37705617	NES09220379	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	C	C	C		C	C		T
ss321261995	CHEV_4_111148958	CHEVERUD	SCREENING_POP	f	SNP											A			A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
rs28252598					SNP	C	C	C	C	C	C	T	C	C	C	A	C	C	A	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37705617	NES09220379	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:111333550 () rs orientation: forward

Symbol	Name	Function Class
Agbl4	ATP/GTP binding protein-like 4	Intron
Rr597469	regulatory region 597469	350 bp distal
Tssr42798	transcription start site region 42798	1143 bp downstream