rs28252597 SNP Detail

Summary

• ID
  rs28252597
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:111333596 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGAAGTGTTA GAAGTGAAGG
  GACAGAGGAG GGAAGGGAAA AGACAGGGAT CTGGAAAACT GATGTATATG ATGCCTCTGT
  AAGAGCCTTG AGGAAGATAG TGGATGCCTT TGTGTGTGAG AGGAGGATCT TAGACATGAG
  CTCTCAGGAT TCAGCGAGAA GAAGGAGAGA CAGGAGAGCA CTAAGAGGAG TCCAGGGTGA
  Y
  TGTGATGGAG AGAGAGAGGA TGATGAGACT GGAAGACCAG GTGGAACCAG GGCTCAGGAG
  CCTTGGGAAC ACAGGAGGGT TTTCAGCAAG GATCTAGAAG CATCATTTGA AAGCACTTCT
  GGGTATGTTG TGGAGGACTG ATTGGAGAGT GCTCGGCTTT TTCAGGCATT CTGGCAACAG
  GAAGTAAGGA CTTTCTGAGA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss37705616	NES09220380	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs28252597					SNP	C	C	C	C	C	C	T	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37705616	NES09220380	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:111333596 () rs orientation: forward

Symbol	Name	Function Class
Agbl4	ATP/GTP binding protein-like 4	Intron
Rr597469	regulatory region 597469	396 bp distal
Tssr42798	transcription start site region 42798	1097 bp downstream