rs28162244 SNP Detail

Summary

• ID
  rs28162244
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:107686822 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGACACCTGT TCTGCATGGT
  CTGTAGGAGA GGTCCACAGT GAGATGGCTG GGTACCATTC TCTGCTAGGT GCCTGTGTGG
  CCAGGCTCTC CTTCTAAGAA CCTCAGCTTC CCATAGGATC AAGAGCTTGT ATCACATAGT
  GCTTCCTGAT ATGGCTCACT GGACTTCCTT TTCTTGGGAA ATTAATAGAC ATGGCATCCA
  R
  AAGTGGGGAT CTTCATTAAA CAAGATTGGA TGTGCTGGAA GAAACAGCCA GTCAGGTATC
  TGCTGCAGGC TTTTCTGGGG GTGGGGTAGC TTTTGTTATG CTGGTGACAT CTCGATTCTC
  TAAGGGGGAA AGTATATCCC AAAGACCTGA GCAGATGGCT GCCCAGGCTC TGTGCCTGAC
  TTCCTCTGCT AGCAGCTGTT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss38283178	NES09528918	PERLEGEN	MM_PANEL2	f	SNP	A	G	G	A	G	A	A	A		A	G	A	A		A
ss321251703	CHEV_4_107502230	CHEVERUD	SCREENING_POP	f	SNP									A					G
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs28162244					SNP	A	G	G	A	G	A	A	A	A	A	G	A	A	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38283178	NES09528918	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:107686822 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Lrp8	low density lipoprotein receptor-related protein 8, apolipoprotein e receptor			Intron
				Noncoding-Transcript-Variant
Lrp8os1	low density lipoprotein receptor-related protein 8, apolipoprotein e receptor, opposite strand 1			within coordinates
Rr597082	regulatory region 597082			1215 bp proximal
Tssr38270	transcription start site region 38270			1324 bp upstream
Tssr38271	transcription start site region 38271			1333 bp upstream