rs28162237 SNP Detail

Summary

• ID
  rs28162237
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:107688410 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGGGGCAGAC TGGCACAGAG
  GGACATAAAT CCCTGGAAAC AGAGAACCAC AGCCTGGAGC CCAGCTGGGG AATTGCCCTG
  GGAACCAAAG CCAAGGCCAG GAGAGTAGGG TCTGGCCTGG CCTTCAGTGA CAGCTTGACC
  GGCTTGGCCT CTTCCTGTGG CAGGGCTGAG CTAGCTTGGT TACACTGGAG GGACCCGACC
  R
  ACGCTGAGCT TGTTCACTGA GCTCTTTTGC CTTTTGTCCT GTGGCAGTGC TACACAGGAA
  AGTCACATCC CTACTGGCTC GGAGACAGAA GGGACTTGCC TTCAGTCACC TAGTCCAACG
  GGGGGACTTC AAAGGTGGTT TAGTGCAGTC TCTAGCCTGA AAGTGGTCAT ATCACCTCTG
  TTTCCACAGG GTGGTGTGTT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss38283171	NES09528736	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs28162237					SNP	G	G	G	G	G	G	G	G	G	G	G	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38283171	NES09528736	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:107688410 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Lrp8	low density lipoprotein receptor-related protein 8, apolipoprotein e receptor			Intron
				Noncoding-Transcript-Variant
Lrp8os1	low density lipoprotein receptor-related protein 8, apolipoprotein e receptor, opposite strand 1			309 bp upstream
Rr597082	regulatory region 597082			within coordinates
Tssr38270	transcription start site region 38270			256 bp downstream
Tssr38271	transcription start site region 38271			246 bp downstream