rs28162235 SNP Detail

Summary

• ID
  rs28162235
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:107688852 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACACTTCCGG GCACATGGCA
  AGGGTATAGC TTTGTGCAGG AGCCTCTGTG CTTGGTGGTT GGTTTGCTAC GAGGTCCCTG
  AGAGTTGAGG GGCCTCTGTC ACAGGAGTCC TCGCTCCTCC CCTGCCAGTC AGTGCCCTCA
  TGGCTGCAGG TTTGTGGGAA GGGATTTATT TACCTCTCAC AGACCCTGAA GTCCTTCTGC
  Y
  GCCTACCCAC TCACGTCTTT GAGCCTCAGT TTCCTCTGTA AACGAGATTG ACAGCAGTTG
  CCAGGGTAGC TGTGAGGGGG TTGTAGGATT TGGGGTGAGA GGCCCAAGTC TAGATCTGGG
  TGAATATGGC CGAACCGGCC CAGATACTGA AACAGTCTGT CCCGCAGTCT GCTGTGGGTC
  AGCTAAGCCT GAGCTGACAC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss38283168	NES09528739	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C		C	C	C	T		C
ss321251714	CHEV_4_107504260	CHEVERUD	SCREENING_POP	f	SNP									T					C
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs28162235					SNP	C	C	C	C	C	C	C	C	T	C	C	C	T	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38283168	NES09528739	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:107688852 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Lrp8	low density lipoprotein receptor-related protein 8, apolipoprotein e receptor			Intron
				Noncoding-Transcript-Variant
Lrp8os1	low density lipoprotein receptor-related protein 8, apolipoprotein e receptor, opposite strand 1			751 bp upstream
Rr597082	regulatory region 597082			299 bp distal
Tssr38270	transcription start site region 38270			698 bp downstream
Tssr38271	transcription start site region 38271			688 bp downstream