rs28156188 SNP Detail

Summary

• ID
  rs28156188
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:94149175 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCCCCAATGG CCACTTGCCT
  CTAATATATT GTAGCCTGGA TTTTCAGCTT ATTTTTCTCA ACCTCCAACT CCATCTGCAG
  ATTGATATTT CCAGTTTCTT TCAGGAAGGA AGTTCTGCTG CACCTGAAAG GGGACTCATG
  CTTGCACTAC GGACCAGAAA CATACTTGAA ATAGTGTATG AAGAATGTGG CTTCCTAGAC
  M
  GACCTAGATA TTTTATGAAG CAGAAAAGGT ATATACAGCT CTCAGGTTTT CAAGTAAAAG
  AAGACCCCTT AATTACTCCG GCCCAAGAAG AAGGGATATC TTCTCGATAA ACCCCTTGTG
  TTCAGTGGTC AAATGGGTAG CTACCCTCTA ATCTCTATTG ATTTACCTCT CAGATGTATC
  CTTCATAATT GATCCCCAAC                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss38260122	NES09543464	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	A	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs28156188					SNP	C	C	C	C	C	C	A	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38260122	NES09543464	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:94149175 () rs orientation: forward

Symbol	Name	Function Class
Gm12648	predicted gene 12648	within coordinates
Rr595320	regulatory region 595320	379 bp proximal