rs28156186 SNP Detail

Summary

• ID
  rs28156186
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:94149368 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCTAGACCGA CCTAGATATT
  TTATGAAGCA GAAAAGGTAT ATACAGCTCT CAGGTTTTCA AGTAAAAGAA GACCCCTTAA
  TTACTCCGGC CCAAGAAGAA GGGATATCTT CTCGATAAAC CCCTTGTGTT CAGTGGTCAA
  ATGGGTAGCT ACCCTCTAAT CTCTATTGAT TTACCTCTCA GATGTATCCT TCATAATTGA
  Y
  CCCCAACCCT TAGAAAGAAA TTGGCTTGTC CTAAAACAAG ATTTATGCAG GCAAGATAAA
  TTTCAGCCAT GACCATGGCT CTCATAAAAT GGAAGCCAGT TGGAAGAAGT TGTCTTTGAT
  ATTTGAGAGA AGTTCCTTTG ATAGAGCCTC TTCCTGATAA ATCTAAGAGA ACTATACCTT
  TGACAATATC ACCACCTACT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss38260120	NES09543466	PERLEGEN	MM_PANEL2	f	SNP	C		T	T	T	T	T	T	T	T	T	T	T	T	T
ss45678410	mCV22717721	ABI	CRAMUS_MOUSE	f	SNP	C	C	T						T
ss147046622	ENSMUSSNP1004806	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	T						T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs28156186					SNP	C	C	T	T	T	T	T	T	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38260120	NES09543466	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:94149368 () rs orientation: forward

Symbol	Name	Function Class
Gm12648	predicted gene 12648	within coordinates
Rr595320	regulatory region 595320	186 bp proximal