rs28150190 SNP Detail

Summary

• ID
  rs28150190
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:107543750 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACTGGTCTTA GTGGCTCACT
  GGTGTAGAAA CTCGGCGAGC CTCAGAAAAG AGTGATTCTA GCTCACGTGG AAGCCGTGGC
  TGAGCCAGCG AATCTTTCAT CCCTGACTCG GGGTTGGGGA AGACCTGGCA CTGAGTCGCC
  TGAGCCTCCT GACTGGAGAG TCTGGGCTGT TTTAATTCTC GTGAATTTAG TTATTTCTGT
  R
  AAGCAACCAA AATCTTAGAA AGGCTAGCAC ATGGCACAGG CTTCCTAGTG GCTTTGTTTG
  TGCTGGGCAT GGAACCCGGG CCTTGAGCAT GTTAGGCAAG TTATCCAACT AAAAATCCCA
  CCTTTTATTT TCCCTTCTTT CCTTCCCTGC CTCCCTGCCT CCCTCCCTCC TTTTTTCTTT
  GTGTAGAATC TAAGTGAAGT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	AKR/J	CAST/EiJ	LG/J	SM/J
ss38283816	NES09510830	PERLEGEN	MM_PANEL2	f	SNP	G	A
ss321250034	CHEV_4_107359158	CHEVERUD	SCREENING_POP	f	SNP			A	G
SNP Consensus Information
SNP					Consensus Type	AKR/J	CAST/EiJ	LG/J	SM/J
rs28150190					SNP	G	A	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38283816	NES09510830	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:107543750 () rs orientation: forward

Symbol	Name	Function Class
Gm12899	predicted gene 12899	1575 bp upstream
Rr376978	regulatory region 376978	880 bp upstream
Rr597042	regulatory region 597042	1448 bp proximal
Tssr38260	transcription start site region 38260	1936 bp upstream