rs28150188 SNP Detail

Summary

• ID
  rs28150188
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:107545155 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGTCTCTGCC CTGCTCTAAC
  ACCTATGTAT ACCTCACATT TTAAAAACAG GCCCCTTAGA TGGAGGGTAG ACGATCTTTC
  TCCAGTACTC ACCAATTCAA ACTGTCTAAA TTTTTCACTG ACCTTGTTAT TTAAAACTAT
  ACCTAAAAAA TCAGTTTCAG GGGCTCTGGT GGCAAGAGCT AGCCAGGGCA CTCGGAGGTC
  R
  GATGCCTATG ACCATGCATC CTTTATGGGT GTGGGAACTA GTGGGGGTTT CTTCTCACAC
  ACCAGAAAAA AAAAAGCAGC CTTGGGGGTA CATGAACCCT GGTGGCAGGA GTGAGCAGTC
  AGCTTTTTGT CCCCAGGTTC AGCTGCTGGG GGAATCCAAA TGGCAGTTAC CTCCCAAACC
  AGCAAACTAC AGCAAGTTAC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	AKR/J	CAST/EiJ	MOLF/EiJ
ss38283814	NES09510707	PERLEGEN	MM_PANEL2	f	SNP	A	G	G
SNP Consensus Information
SNP					Consensus Type	AKR/J	CAST/EiJ	MOLF/EiJ
rs28150188					SNP	A	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38283814	NES09510707	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:107545155 () rs orientation: forward

Symbol	Name	Function Class
1700047F07Rik	RIKEN cDNA 1700047F07 gene	1642 bp upstream
Gm12899	predicted gene 12899	170 bp upstream
Rr376978	regulatory region 376978	within coordinates
Rr597042	regulatory region 597042	43 bp proximal
Tssr38260	transcription start site region 38260	531 bp upstream