rs28150187 SNP Detail

Summary

• ID
  rs28150187
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:107545411 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CACACACCAG AAAAAAAAAA
  GCAGCCTTGG GGGTACATGA ACCCTGGTGG CAGGAGTGAG CAGTCAGCTT TTTGTCCCCA
  GGTTCAGCTG CTGGGGGAAT CCAAATGGCA GTTACCTCCC AAACCAGCAA ACTACAGCAA
  GTTACAGCCT TCAGAGCCCC AGGTGACACG GCCCAGAAAG CCAGATGGAG TGTCCTTTGA
  R
  GAAGGTGACA TTATCTACAT TACTGACTCA AGCGTTATCA ACTGATGGAA GGGCGGCAGG
  ACTCAGCTAA TTCCAAGCAG GGATGTGACC GAGCAGGCAG GATCCACTGA CCACCAGCTG
  CACTGGGCAG CCTGAGCCAG AGGGGTGTTT GGCTAACCCA GCGGGTGTTA ATGGCTTAGA
  CAGAGCTGGA AGCACGGCTT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	AKR/J	CAST/EiJ	LG/J	MOLF/EiJ	SM/J
ss38283813	NES09510708	PERLEGEN	MM_PANEL2	f	SNP	A	G		G
ss321250043	CHEV_4_107360819	CHEVERUD	SCREENING_POP	f	SNP			G		A
SNP Consensus Information
SNP					Consensus Type	AKR/J	CAST/EiJ	LG/J	MOLF/EiJ	SM/J
rs28150187					SNP	A	G	G	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38283813	NES09510708	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:107545411 () rs orientation: forward

Symbol	Name	Function Class
1700047F07Rik	RIKEN cDNA 1700047F07 gene	1386 bp upstream
Gm12899	predicted gene 12899	within coordinates
Rr376978	regulatory region 376978	within coordinates
Rr597042	regulatory region 597042	within coordinates
Tssr38260	transcription start site region 38260	275 bp upstream