rs28150186 SNP Detail

Summary

• ID
  rs28150186
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:107545581 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCCCAGAAAG CCAGATGGAG
  TGTCCTTTGA AGAAGGTGAC ATTATCTACA TTACTGACTC AAGCGTTATC AACTGATGGA
  AGGGCGGCAG GACTCAGCTA ATTCCAAGCA GGGATGTGAC CGAGCAGGCA GGATCCACTG
  ACCACCAGCT GCACTGGGCA GCCTGAGCCA GAGGGGTGTT TGGCTAACCC AGCGGGTGTT
  M
  ATGGCTTAGA CAGAGCTGGA AGCACGGCTT TGTCTGGACT TGCCCTGGTC ATCGCTAAGA
  CAGAGTGAAA GTCCCGTTTA CAAAGCCAAG CAGTGAGCAA AACAGACAGA CGGGAGACAA
  GCAGTGAGCA GAACAGACAG ACAGGAGACA AGGCTTTCAT GCTGATGCCC ACGACGGTTG
  CTCCTGGGAA AGGCAAGAAC                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	AKR/J	CAST/EiJ	LG/J	MOLF/EiJ	SM/J
ss38283812	NES09510709	PERLEGEN	MM_PANEL2	f	SNP	A	C		C
ss321250044	CHEV_4_107360989	CHEVERUD	SCREENING_POP	f	SNP			C		A
SNP Consensus Information
SNP					Consensus Type	AKR/J	CAST/EiJ	LG/J	MOLF/EiJ	SM/J
rs28150186					SNP	A	C	C	C	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38283812	NES09510709	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:107545581 () rs orientation: forward

Symbol	Name	Function Class
1700047F07Rik	RIKEN cDNA 1700047F07 gene	1216 bp upstream
Gm12899	predicted gene 12899	within coordinates
Rr376978	regulatory region 376978	within coordinates
Rr597042	regulatory region 597042	within coordinates
Tssr38260	transcription start site region 38260	105 bp upstream