rs28129724 SNP Detail

Summary

• ID
  rs28129724
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:108489933 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGGACAGCTA CAGTGAACTC
  ATATAAAGAA AATAAATGCA TCTTAAATAA AGAACCTGCT TCTAACAAAC GGAGAACAGG
  CCAGAGGAGA AGGACTTGCT AGTTCATATA AACTGTCCTT GGCAGAGCCA GGTCCAGACA
  GACTTTTACA ATACTTTTGG AAGCTAGAGC TTGCCTCTCC CTCGTGGAGT TGTCCTAAAG
  Y
  GGGGCCTATT CTGAATTGCC TTGAGGGAGG TTCAAATCCC AAGCTTTTGT TGTAAGCTTT
  ATTCATCTAG TTCCTTATCT GTTCTGAGGA GGCCATGGCC TGGGTTCTGC TTGTGACTGC
  TACCCACCCC CTTCTCTGTG GGCCACATGT GCGTGTGGAC TTCAGGCTGC TCCTTGAAGC
  CAGTGTTCGG GAAGATCAAG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
ss38280444	NES09506314	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	T	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
rs28129724					SNP	C	C	C	C	C	C	C	C	T	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38280444	NES09506314	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:108489933 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cc2d1b	coiled-coil and C2 domain containing 1B			Intron
				Noncoding-Transcript-Variant
Gm17354	predicted gene, 17354			1107 bp downstream
Rr597206	regulatory region 597206			204 bp distal
Tssr38309	transcription start site region 38309			349 bp upstream
Tssr38310	transcription start site region 38310			360 bp upstream
Tssr38311	transcription start site region 38311			384 bp upstream